PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9511_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 1057aa    MW: 118267 Da    PI: 9.4919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9511_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-091144338
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                                          W++eE  ++++a +++G++ Wk++a+ +  +R+  
  cra_locus_9511_iso_2_len_3494_ver_3 11 QWSKEELTRFYEAYRKYGKD-WKKVASAVR-NRSVD 44
                                         6*****************99.*********.99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.696760IPR017884SANT domain
SMARTSM007172.2E-4856IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-101056IPR009057Homeodomain-like
PfamPF002497.5E-81146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-51144IPR009057Homeodomain-like
CDDcd001671.13E-51246No hitNo description
SMARTSM011351.7E-54599700IPR033471DIRP domain
PfamPF065849.4E-33599699IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1057 aa     Download sequence    Send to blast
KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY TMNRAYLSLP  60
EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG NSKASDVQIT  120
SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS PTRQGLRMKT  180
DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR AGLKSVNARN  240
VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD DSSDNHLDDI  300
KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA FDALQTLADL  360
SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV KVDRSSSRLG  420
VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV SESQEAEARD  480
IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS LPTSVRSRRK  540
RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL RRWCTYEWFY  600
SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF LKEEKKKLNQ  660
YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL TVDHARCRVQ  720
FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER AKASPGGEVD  780
NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ PCTSAQIQAK  840
EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV LVQLQEANEQ  900
VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA NEIIEGSRAK  960
ARTMVDIAMQ VADPKSKCAS DKNEAQIPAE LITQCVATLL MIQKCTERQF PPADVAQILD  1020
SAVTSLKPCC SQNLSMYAEI QKCMGMIKNQ ILALIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453459RKKQKIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595581.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
RefseqXP_009595580.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A068UX250.0A0A068UX25_COFCA; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)